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Shaun

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Aron S, Jongeneel CV, Chauke PA, Chaouch M, Kumuthini J, Zass L, Radouani F, Kassim SK, Fadlelmola FM, Mulder N. Ten simple rules for developing bioinformatics capacity at an academic institution. PLoS Comput Biol. 2021 12; 17(12):e1009592. PMID: 34882684; PMCID: PMC8659687.
      Citations: 3     Fields:    Translation:Humans
    2. Sengupta D, Choudhury A, Fortes-Lima C, Aron S, Whitelaw G, Bostoen K, Gunnink H, Chousou-Polydouri N, Delius P, Tollman S, Gómez-Olivé FX, Norris S, Mashinya F, Alberts M, AWI-Gen Study, H3Africa Consortium, Hazelhurst S, Schlebusch CM, Ramsay M. Genetic substructure and complex demographic history of South African Bantu speakers. Nat Commun. 2021 04 07; 12(1):2080. PMID: 33828095; PMCID: PMC8027885.
      Citations: 27     Fields:    Translation:HumansCells
    3. Choudhury A, Aron S, Botigué LR, Sengupta D, Botha G, Bensellak T, Wells G, Kumuthini J, Shriner D, Fakim YJ, Ghoorah AW, Dareng E, Odia T, Falola O, Adebiyi E, Hazelhurst S, Mazandu G, Nyangiri OA, Mbiyavanga M, Benkahla A, Kassim SK, Mulder N, Adebamowo SN, Chimusa ER, Muzny D, Metcalf G, Gibbs RA, TrypanoGEN Research Group, Rotimi C, Ramsay M, H3Africa Consortium, Adeyemo AA, Lombard Z, Hanchard NA. Author Correction: High-depth African genomes inform human migration and health. Nature. 2021 Apr; 592(7856):E26. PMID: 33846614; PMCID: PMC8081653.
      Citations: 3     Fields:    
    4. Ras V, Botha G, Aron S, Lennard K, Allali I, Claassen-Weitz S, Mwaikono KS, Kennedy D, Holmes JR, Rendon G, Panji S, Fields CJ, Mulder N. Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa. PLoS Comput Biol. 2021 02; 17(2):e1008640. PMID: 33630830; PMCID: PMC7906323.
      Citations: 7     Fields:    Translation:Humans
    5. Sooklal SA, Mpangase PT, Tomescu MS, Aron S, Hazelhurst S, Archer RH, Rumbold K. Functional characterisation of the transcriptome from leaf tissue of the fluoroacetate-producing plant, Dichapetalum cymosum, in response to mechanical wounding. Sci Rep. 2020 11 25; 10(1):20539. PMID: 33239700; PMCID: PMC7688953.
      Citations: 1     Fields:    Translation:AnimalsCells
    6. Choudhury A, Aron S, Botigué LR, Sengupta D, Botha G, Bensellak T, Wells G, Kumuthini J, Shriner D, Fakim YJ, Ghoorah AW, Dareng E, Odia T, Falola O, Adebiyi E, Hazelhurst S, Mazandu G, Nyangiri OA, Mbiyavanga M, Benkahla A, Kassim SK, Mulder N, Adebamowo SN, Chimusa ER, Muzny D, Metcalf G, Gibbs RA, TrypanoGEN Research Group, Rotimi C, Ramsay M, H3Africa Consortium, Adeyemo AA, Lombard Z, Hanchard NA. High-depth African genomes inform human migration and health. Nature. 2020 10; 586(7831):741-748. PMID: 33116287; PMCID: PMC7759466.
      Citations: 130     Fields:    Translation:HumansCells
    7. Nweke EE, Naicker P, Aron S, Stoychev S, Devar J, Tabb DL, Omoshoro-Jones J, Smith M, Candy G. SWATH-MS based proteomic profiling of pancreatic ductal adenocarcinoma tumours reveals the interplay between the extracellular matrix and related intracellular pathways. PLoS One. 2020; 15(10):e0240453. PMID: 33048956; PMCID: PMC7553299.
      Citations: 8     Fields:    Translation:HumansCells
    8. Baichoo S, Souilmi Y, Panji S, Botha G, Meintjes A, Hazelhurst S, Bendou H, Beste E, Mpangase PT, Souiai O, Alghali M, Yi L, O'Connor BD, Crusoe M, Armstrong D, Aron S, Joubert F, Ahmed AE, Mbiyavanga M, Heusden PV, Magosi LE, Zermeno J, Mainzer LS, Fadlelmola FM, Jongeneel CV, Mulder N. Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics. BMC Bioinformatics. 2018 Nov 29; 19(1):457. PMID: 30486782; PMCID: PMC6264621.
      Citations: 16     Fields:    Translation:Humans
    9. Choudhury A, Aron S, Sengupta D, Hazelhurst S, Ramsay M. African genetic diversity provides novel insights into evolutionary history and local adaptations. Hum Mol Genet. 2018 08 01; 27(R2):R209-R218. PMID: 29741686; PMCID: PMC6061870.
      Citations: 17     Fields:    Translation:Humans
    10. Ahmed AE, Mpangase PT, Panji S, Baichoo S, Souilmi Y, Fadlelmola FM, Alghali M, Aron S, Bendou H, De Beste E, Mbiyavanga M, Souiai O, Yi L, Zermeno J, Armstrong D, O'Connor BD, Mainzer LS, Crusoe MR, Meintjes A, Van Heusden P, Botha G, Joubert F, Jongeneel CV, Hazelhurst S, Mulder N. Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience. AAS Open Res. 2018; 1:9. PMID: 32382696; PMCID: PMC7194140.
      Citations: 8     
    11. Choudhury A, Ramsay M, Hazelhurst S, Aron S, Bardien S, Botha G, Chimusa ER, Christoffels A, Gamieldien J, Sefid-Dashti MJ, Joubert F, Meintjes A, Mulder N, Ramesar R, Rees J, Scholtz K, Sengupta D, Soodyall H, Venter P, Warnich L, Pepper MS. Whole-genome sequencing for an enhanced understanding of genetic variation among South Africans. Nat Commun. 2017 12 12; 8(1):2062. PMID: 29233967; PMCID: PMC5727231.
      Citations: 55     Fields:    Translation:Humans
    12. Gurwitz KT, Aron S, Panji S, Maslamoney S, Fernandes PL, Judge DP, Ghouila A, Domelevo Entfellner JB, Guerfali FZ, Saunders C, Mansour Alzohairy A, Salifu SP, Ahmed R, Cloete R, Kayondo J, Ssemwanga D, Mulder N, H3ABioNet Consortium's Education Training and Working Group as members of the H3Africa Consortium. Designing a course model for distance-based online bioinformatics training in Africa: The H3ABioNet experience. PLoS Comput Biol. 2017 Oct; 13(10):e1005715. PMID: 28981516; PMCID: PMC5628786.
      Citations: 17     Fields:    Translation:Humans
    13. Webb H, Steeb O, Blane A, Rotherham L, Aron S, Machanick P, Dirr H, Fanucchi S. The FOXP2 forkhead domain binds to a variety of DNA sequences with different rates and affinities. J Biochem. 2017 Jul 01; 162(1):45-54. PMID: 28104810.
      Citations: 2     Fields:    Translation:HumansCells
    14. Jongeneel CV, Achinike-Oduaran O, Adebiyi E, Adebiyi M, Adeyemi S, Akanle B, Aron S, Ashano E, Bendou H, Botha G, Chimusa E, Choudhury A, Donthu R, Drnevich J, Falola O, Fields CJ, Hazelhurst S, Hendry L, Isewon I, Khetani RS, Kumuthini J, Kimuda MP, Magosi L, Mainzer LS, Maslamoney S, Mbiyavanga M, Meintjes A, Mugutso D, Mpangase P, Munthali R, Nembaware V, Ndhlovu A, Odia T, Okafor A, Oladipo O, Panji S, Pillay V, Rendon G, Sengupta D, Mulder N. Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network. PLoS Comput Biol. 2017 Jun; 13(6):e1005419. PMID: 28570565; PMCID: PMC5453403.
      Citations: 7     Fields:    Translation:Humans
    15. Mulder NJ, Adebiyi E, Adebiyi M, Adeyemi S, Ahmed A, Ahmed R, Akanle B, Alibi M, Armstrong DL, Aron S, Ashano E, Baichoo S, Benkahla A, Brown DK, Chimusa ER, Fadlelmola FM, Falola D, Fatumo S, Ghedira K, Ghouila A, Hazelhurst S, Isewon I, Jung S, Kassim SK, Kayondo JK, Mbiyavanga M, Meintjes A, Mohammed S, Mosaku A, Moussa A, Muhammd M, Mungloo-Dilmohamud Z, Nashiru O, Odia T, Okafor A, Oladipo O, Osamor V, Oyelade J, Sadki K, Salifu SP, Soyemi J, Panji S, Radouani F, Souiai O, Tastan Bishop Ö, H3ABioNet Consortium, as members of the H3Africa Consortium. Development of Bioinformatics Infrastructure for Genomics Research. Glob Heart. 2017 06; 12(2):91-98. PMID: 28302555; PMCID: PMC5582980.
      Citations: 30     Fields:    Translation:Humans
    16. Lephoto TE, Mpangase PT, Aron S, Gray VM. Whole genome sequence of Oscheius sp. TEL-2014 entomopathogenic nematodes isolated from South Africa. Genom Data. 2016 Mar; 7:259-61. PMID: 27054091; PMCID: PMC4806700.
      Citations: 2     
    17. Choudhury A, Hazelhurst S, Meintjes A, Achinike-Oduaran O, Aron S, Gamieldien J, Jalali Sefid Dashti M, Mulder N, Tiffin N, Ramsay M. Population-specific common SNPs reflect demographic histories and highlight regions of genomic plasticity with functional relevance. BMC Genomics. 2014 Jun 06; 15:437. PMID: 24906912; PMCID: PMC4092225.
      Citations: 24     Fields:    Translation:Humans
    18. Hull PR, Hobbs A, Aron S, Ramsay M. The elusive gene for keratolytic winter erythema. S Afr Med J. 2013 Oct 11; 103(12 Suppl 1):961-5. PMID: 24300638.
      Citations: 3     Fields:    Translation:Humans
    19. Hobbs A, Aron S, Hartshorne S, Hull PR, Ramsay M. Exclusion of CTSB and FDFT1 as positional and functional candidate genes for keratolytic winter erythema (KWE). J Dermatol Sci. 2012 Jan; 65(1):58-62. PMID: 21945151.
      Citations: 2     Fields:    Translation:HumansCells
    20. Ramsay M, Greenberg T, Lombard Z, Labrum R, Lubbe S, Aron S, Marais AS, Terry S, Bercovitch L, Viljoen D. Spectrum of genetic variation at the ABCC6 locus in South Africans: Pseudoxanthoma elasticum patients and healthy individuals. J Dermatol Sci. 2009 Jun; 54(3):198-204. PMID: 19339160.
      Citations: 4     Fields:    Translation:Humans
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